Monday, January 5, 2026

Research Over Despair

I am always glad to receive letters from people who, despite facing real difficulties, are motivated to understand their condition and actively look for solutions. This letter was one of those.

It came from a young person who had lived with PATM (People Allergic to Me) for just over a year. In that short time, the condition had disrupted education, lab work, friendships, and mental health. Like many others with PATM, this individual had been told - explicitly or implicitly - that what they were experiencing might not be real.

What struck me most was not the suffering (which, sadly, is familiar), but the decision that followed: instead of giving up, they chose to learn, to research, and to ask whether science might eventually provide answers - not only for themselves, but for others.

Below is a modified, bulletized and anonymized version of my response to their questions, shared here because many patients ask the same things.


Why is PATM still an undiagnosed condition?

PATM is often described as “undiagnosed,” but a more accurate term would be not formally recognized.

For a condition to become a recognized clinical entity, several things usually need to be in place:

  • a consistent case definition

  • reproducible, objective measurements

  • and a plausible pathophysiological mechanism that can be validated by multiple independent groups

At present, PATM does not yet meet all of these thresholds.

One major challenge is heterogeneity. The presentation varies widely from person to person, and triggers differ depending on environment, exposure, and individual biology. Another major obstacle is that current clinical workflows are poorly suited to capture intermittent, airborne chemical events. Many patients describe symptoms that occur in bursts—so a clinical visit may appear “normal,” even when the lived experience is not.


What would it take to achieve a formal medical diagnosis?

Large clinical trials can help, but they are rarely the starting point.

The real bottlenecks are:

  • reproducible measurement methods

  • defining subtypes rather than assuming a single mechanism

  • capturing the episodic (“bursty”) nature of emissions

A well-designed, multicenter observational study—with standardized sampling protocols and careful timing relative to symptoms—may be a more realistic bridge step than jumping directly to intervention trials.

An official diagnosis could be beneficial. It can legitimize patients’ experiences in clinical settings, redirect care away from reflexive psychologization and attract more serious research attention. But such a diagnosis has to be built on solid evidence to endure.


Is toluene the main irritation-causing substance?

It is unlikely that there is a single universal compound responsible for PATM.

Research on skin gas emission profiles is important because it demonstrates measurable chemical differences, but the broader picture likely involves multiple emitted mixtures and multiple subtypes. In some individuals, compounds such as toluene or related aromatics may contribute to irritation-like symptoms; in others, different chemical patterns may dominate.

Another key factor may be differences in detoxification or clearance. Some people appear more susceptible to everyday exposures—such as secondhand smoke, solvents, or indoor VOCs—not because exposure is higher, but because metabolism and elimination differ.


What can patients realistically try on their own?

I generally recommend starting with low-risk, high-information approaches:

Structured symptom and exposure logging

Tracking timing, diet, stress, environment (workplace, vehicles, indoor air), laundry and personal care products, and proximity to smoke or solvents can help identify repeatable patterns.

Basic medical rule-outs

Even when PATM is the primary concern, it is important to evaluate common contributors to odor or irritation-related conditions, such as reflux, sinus disease, metabolic or endocrine issues, liver and kidney function, medication effects, and dermatologic conditions.

Environmental controls

VOC-related problems are often exposure-amplified. Fragrance-free products, avoiding solvent-heavy cleaners, improving ventilation, and using HEPA plus activated carbon filtration can reduce background “noise” and make patterns easier to recognize.

I generally advise caution with high-risk or expensive interventions unless there is a clear rationale for a particular subtype.


What about fecal microbiota transplants (FMT)?

FMT is scientifically interesting but should be approached with caution. It is not a general solution for PATM and carries nontrivial risks. If considered at all, it should be under appropriate medical supervision and based on a specific, individualized hypothesis—not as a last-resort experiment.


Are microbiome or skin-gas profiling tests useful?

They can be, if used carefully.

  • Gut microbiome profiling may provide clues, but interpretation is still limited and should always be paired with symptom timelines, diet, and repeat measurements.

  • Skin or exhaled gas profiling is conceptually promising because it targets the suspected output directly. However, episodic emissions make timing critical, and passive sampling methods may miss short-lived events.

The usefulness depends less on the technology itself and more on study design.


Would wearable or portable gas sensors help?

In principle, yes. Continuous or frequent measurement could finally correlate chemical signatures with symptoms and environmental context.

In practice, true GC–MS–grade performance in a wearable format remains extremely challenging. Field measurements are complicated by changing ambient air, and episodic emissions require high time resolution and careful baseline correction. The idea is sound; the technology is still catching up.


Could funding agencies support this kind of work?

Possibly more so now than in the past.

Historically, conditions that primarily affect quality of life rather than mortality have struggled to gain funding. When I first applied for support nearly two decades ago, the problem was explicitly described as “not important enough.”

Today, there is broader recognition of the impact of stigma, mental health, and chronic quality-of-life impairment. Advances in exposomics, microbiome science, and wearable sensing technologies make it easier to frame this work as high-risk, high-reward, particularly if the focus is on measurement platforms, subtyping, and mechanism rather than a single compound.


Much of this may sound like a list of obstacles. But compared with even a decade ago, the path forward is clearer.

If PATM turns out not to be one condition but a family of related ones, that is not a failure of science—it is a more accurate description of biology. Progress will likely come not from searching for a single universal cause, but from building frameworks that can accommodate diversity, intermittency, and complexity.

And sometimes, progress begins with a patient who decides that understanding is better than silence.

Sunday, October 19, 2025

Diets That Dial Down TMA (and TMAO): What Latest Studies Suggest

This week's TL;DR: Diets that are high in fiber and lower in animal protein, plus Mediterranean-style eating, are emerging as the most food-first ways to reduce gut production of trimethylamine (TMA) and its oxidized form TMAO. Early evidence also points to targeted botanicals and postbiotics as promising add-ons - especially for people with heart or kidney concerns. If you live with MEBO/TMAU, the same general principles may apply.  

What seems to help most

1) High-fiber, lower-protein patterns (especially for CKD).
A fiber-rich, modest-protein intake can rebalance gut microbes and lower circulating TMAO in chronic kidney disease. Think: loads of vegetables, legumes, whole grains, nuts/seeds—while keeping total protein moderate and favoring plant sources. (Udomkarnjananun et al., 2025)

2) Mediterranean diet (MED).
A short, 4-week MED intervention—vegetables, fruits, legumes, whole grains, olive oil, nuts; limited red/processed meat—significantly reduced blood TMAO, even in healthy adults. Men in the study also saw better lipids and anthropometrics. (Deniz & Baş, 2025)
Since fish contains pre-formed TMAO that can worsen odor in TMAU, adapt a fish-free Mediterranean pattern if you’re sensitive.

3) Botanicals with gut–heart effects (CHF).
In patients with chronic heart failure, the Chinese botanical formula Qili Qiangxin (QLQX) reduced BNP, TNF-α, IL-6, and TMAO, pointing to lower systemic inflammation and improved barrier function. Food pattern still matters, but this suggests a potential adjunct under medical guidance. (Zhu et al., 2025)

Qiliqiangxin consists of extracts from eleven traditional Chinese medicinal herbs including for example: Panax ginseng  (ginseng), Astragalus mongholicus  (Mongolian milkvetch), Salvia miltiorrhiza (red sage), Cinnamomum cassia (cinnamon twig), Aconitum carmichaelii (Chinese aconite root), Descurainia sophia (flixweed), Periploca sepium (Chinese silkvine root bark), Alisma plantago-aquatica subsp. orientale (Oriental waterplantain), Carthamus tinctorius (safflower), Polygonatum odoratum (Angular Solomon's seal), and Citrus reticulata (dried mandarin peel)

4) Postbiotics (preclinical but intriguing).
In a choline-boosted, high-fat mouse model of atherosclerosis, Weizmannia coagulans JA845 postbiotics (based on B. coagulans JA845) lowered TMAO, improved the microbiome profile, dampened JAK/STAT3 inflammation, and protected vessels. Human data are pending, but this supports the microbiome-modulation avenue alongside diet. (Ma et al., 2025)

Unlike probiotics (which are live microorganisms) and prebiotics (which are food/substrates that feed beneficial microbes), postbiotics are non-live microbial cells, microbial cell parts, or microbial metabolites (or a mix) that can have beneficial effects. 

Example components might include dead/inactivated bacterial cells, cell wall fragments, microbial metabolites like short-chain fatty acids (SCFAs: butyrate, acetate, propionate), peptides and enzymes.


REFERENCES 

Udomkarnjananun S, Chuaypen N, Metta K, Dissayabutra T, Sodsai P, Kittiskulnam P, Tangkijvanich P. Dietary composition modulate gut microbiota and related biomarkers in patients with chronic kidney disease. Sci Rep. 2025 Oct 16;15(1):36274. doi: 10.1038/s41598-025-20266-5. PMID: 41102296; PMCID: PMC12533112. 

Zhu F, Hu R, Lv C, Wang J, Du X, Zeng X, Huang Y, Ma Y, Yang C, Guo F. Qili Qiangxin ameliorates chronic heart failure: a randomized clinical trial of biomarkers, inflammation, and cardiac outcomes. Front Pharmacol. 2025 Sep 30;16:1605944. doi: 10.3389/fphar.2025.1605944. PMID: 41098835; PMCID: PMC12518405. 

Deniz MŞ, Baş M. Short-Term Mediterranean Dietary Intervention Reduces Plasma Trimethylamine-N-Oxide Levels in Healthy Individuals. Nutrients. 2025 Sep 30;17(19):3135. doi: 10.3390/nu17193135. PMID: 41097210; PMCID: PMC12525710. Ma L, Li N, Zhao Z, Zhao Y, 

Yang G, Zhao L, Li S. Weizmannia coagulans JA845 Postbiotics Alleviate Atherosclerosis via TMAO-Related Gut Microbiota Regulation and JAK/STAT3 Pathway Inhibition. Nutrients. 2025 Sep 23;17(19):3027. doi: 10.3390/nu17193027. PMID: 41097105; PMCID: PMC12526339.

Wednesday, August 13, 2025

AI meets MEBO

After a bit of a break since our first podcast back in March, we’re excited to return with a brand new episode for the MEBO and PATM community.

In this video, we’re exploring a big question: Can patients themselves use AI to help uncover potential causes, connections, and treatments for their symptoms?

The episode was generated by NotebookLM, based on our own research and the outputs of multiple large language models answering real questions from patients and researchers about these conditions. It’s a very good discussion overall - balanced, empathetic, and realistic about the challenges - but there are a few small hiccups.

For example, the video says that the paper "Cutaneous Bacteria in the Gut Microbiome as Biomarkers of Systemic Malodor and People Are Allergic to Me (PATM) Conditions" was published in Frontiers in Psychiatry in 2022. In fact, it appeared in JMIR Dermatology, a peer-reviewed journal, but one that isn’t indexed in PubMed - so it often doesn’t register in medical literature searches. Interestingly, when we asked half a dozen more LLMs about this paper, none knew much about it. Some even called it “groundbreaking” or “a beacon” without actually having the details, and a few hallucinated links that don’t exist.

PATM and MEBO are still often misclassified or linked to Olfactory Reference Syndrome, but there is growing recognition that underlying microbial dysbiosis or metabolic disorders may play a role.

Still, the bigger picture is encouraging: LLMs are improving, and that gives hope for people living with under-researched, heterogeneous, and often misunderstood conditions. While this podcast focuses a bit more on social and emotional support than on treatment options, that’s also an essential part of living with these conditions - and it makes this video worth watching.

Let’s dive in and see what AI can - and can’t - offer us right now.


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Wednesday, April 16, 2025

The Smell of Life

Sulfur-rich smells are easy to recognize—think of the ocean at low tide, a bit of garlic, or even bad breath. While not always pleasant, they’re often tied to life processes. On Earth, compounds like dimethyl sulfide (DMS) and dimethyl disulfide (DMDS) are made by microbes, plants, and even our own bodies. For example, DMS is a byproduct of marine algae, and both DMS and DMDS are linked to the metabolism of sulfur-containing foods like garlic and onions.   

Interestingly, these same compounds can also show up when organic matter breaks down. Over time, the mix of smells changes—starting with more sulfur notes like DMDS and shifting toward other compounds like ketones and acids. But in the early stages, it’s sulfur that dominates the scent, reinforcing that these molecules are deeply tied to life, not just what comes after it.

They even show up in everyday biology—DMS contributes to halitosis (bad breath), and sulfur compounds in urine can reveal what you’ve eaten recently, like garlic or leeks. And while they can be a nuisance in places like sewers due to their strong odor and reactivity, these volatile sulfur compounds are powerful chemical clues that life is (or was) at work.


Reported Sensory Thresholds for Sulfur Compounds
CompoundStructureSensory DescriptionRange (ppb)
hydrogen sulfideH2Srotten egg, sewage-like0.9 - 1.5
ethyl mercaptanCH3CH2SHburnt match, sulfidy, earthy1.1 - 1.8
methanethiol, methyl mercaptanCH3SHskunk, flatulence, rotten cabbage, burnt rubber1.5
diethyl sulfideCH3CH2SCH2CH3rubbery0.9 - 1.3
DMS, dimethyl sulfideCH3SCH3ocean, canned corn, cooked cabbage, asparagus17- 25
diethyl disulfideCH3CH2SSCH2CH3garlic, burnt rubber3.6 - 4.3
DDMS, dimethyl disulfideCH3SSCH3vegetables, cabbage, onion-like at high levels9.8 - 10.2
carbon disulfideCS2sweet, ethereal, slightly green, sulfidy5


Imagine cracking open a clam at low tide or walking through a marsh at dusk. The faint, tangy smell of sulfur in the air? That’s dimethyl sulfide (DMS), a molecule born of life. It’s a scent tied to oceans, microbes, and biology itself.

Now picture that same signature—those familiar chemical traces—not wafting from Earth’s shoreline but drifting through the atmosphere of a distant world. That’s exactly what a team of astronomers, led by Nikku Madhusudhan at the University of Cambridge, believe they may have found.

Using the James Webb Space Telescope (JWST), they detected not only dimethyl sulfide (DMS) but also dimethyl disulfide (DMDS) in the atmosphere of exoplanet K2-18b orbiting a star 124 light-years away. On Earth, these molecules are exclusively produced by living organisms, especially marine phytoplankton and sulfur-reducing microbes.

Is this the first scent of alien life?

K2-18b has long intrigued scientists. Discovered in 2015 and confirmed to host water vapor in its atmosphere by 2019, it lies in the habitable zone of its star—a region where liquid water could exist. The planet is a sub-Neptune, about 8 times the mass of Earth, likely hosting a vast ocean beneath a hydrogen-rich sky.

When JWST's near-infrared instrument first picked up hints of DMS, the signal was tantalizing but faint. Now, using its mid-infrared camera, a much stronger signal has emerged—not just for DMS, but for DMDS, a closely related molecule. Both are complex sulfur-containing compounds known to be byproducts of living metabolic processes—especially those involving the breakdown of dimethylsulfoniopropionate (DMSP), an osmolyte made by marine algae.

On Earth, the sulfur cycle involves a complex web of microbial transformations, particularly in anoxic oceanic zones. Phytoplankton produce DMSP as a way to handle osmotic stress; when grazed by zooplankton or lysed by viruses, DMSP is broken down into DMS. Other microbes metabolize sulfur compounds into DMDS, H₂S, and others.

If such a cycle—or something like it—exists on K2-18b, it would suggest a complex biosphere, not just isolated organisms.

But here's the rub: abiotic pathways for these molecules must be explored and excluded. Could volcanic activity, UV-driven chemistry, or some exotic atmospheric process generate DMS or DMDS in a hydrogen-rich atmosphere? Theoretical chemists are scrambling for answers.

So, caution remains the astronomer's motto. The team stresses that while the signal is the strongest yet, non-biological explanations must be thoroughly ruled out before claiming even the possibility of life.

A molecule that, on Earth, rises from algae-covered oceans, has now risen from the atmosphere of a distant world. Whether this is truly life, or an undiscovered quirk of chemistry, remains to be seen.

But for the first time, astronomy is starting to smell like biology.


REFERENCES

Srila W, Sripilai K, Binlateh T, Thammanichanon P, Tiskratok W, Noisa P, Jitprasertwong P. Relationship Between the Salivary Microbiome and Oral Malodor Metabolites in Older Thai Individuals with Periodontitis and the Cytotoxic Effects of Malodor Compounds on Human Oral Squamous Carcinoma (HSC-4) Cells. Dentistry Journal. 2025 Jan 16;13(1):36.

Dekeirsschieter J, Stefanuto PH, Brasseur C, Haubruge E, Focant JF. Enhanced characterization of the smell of death by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry (GCxGC-TOFMS). PLoS One. 2012;7(6):e39005. doi: 10.1371/journal.pone.0039005. Epub 2012 Jun 18. PMID: 22723918; PMCID: PMC3377612.

Madhusudhan, Nikku; et al. (March 2020). "The Interior and Atmosphere of the Habitable-zone Exoplanet K2-18b". The Astrophysical Journal Letters. 891 (1). L7. arXiv:2002.11115. doi:10.3847/2041-8213/ab7229

Schmidt SP, MacDonald RJ, Tsai SM, Radica M, Wang LC, Ahrer EM, Bell TJ, Fisher C, Thorngren DP, Wogan N, May EM. A Comprehensive Reanalysis of K2-18 b's JWST NIRISS+ NIRSpec Transmission Spectrum. arXiv preprint arXiv:2501.18477. 2025 Jan 30. arXiv:2501.18477 [astro-ph.EP]  https://doi.org/10.48550/arXiv.2501.18477

Ma J, Han Y, Ge J, Wen L, Ma C, Qi Y, Volmer DA. Comprehensive Two‐Dimensional Gas Chromatography–Mass Spectrometry for the Analysis of Atmospheric Particulate Matter. Rapid Communications in Mass Spectrometry. 2025 Jul 15;39(13):e10034.