Sunday, August 9, 2026

Fusarium, the Microbiome, and the Many Possible Pathways of PATM

After years of collecting patient histories, correspondence, and laboratory reports, one impression has become increasingly difficult to ignore: there may not be one single underlying cause of PATM or MEBO. Instead, different people may arrive at a similar set of symptoms through different biological pathways.

We do have a growing list of possible culprits and triggers, and we are beginning to see that some patients can be matched by particular findings. But it remains a list—with many different candidates rather than one universal explanation. 

Last week, for example, we received a letter from a young woman in the United States who had experienced MEBO for approximately a decade. She was only recently diagnosed with biliary dyskinesia, a disorder affecting the movement of bile from the gallbladder.

This is not the first story of this type that we have encountered. In the past, we heard from a young man in China who had experienced PATM for approximately eight years and from a 37-year-old man in the United States who reported having PATM since he was 14. Both suspected problems with their gallbladder as a culprit.

These stories align with our observation that disturbances in different parts of the gastrointestinal system may sometimes contribute to a similar downstream phenomenon.

And then today, we received another intriguing history, this time from a man in Finland.

He believes that his PATM began following exposure to a water-damaged building and that Fusarium, a genus of fungi, may be involved.  Fusarium odoratissimum are explicitly named for their potent, recognizable odor and many strains produce damp, musty unpleasant smells. He subsequently had testing that detected mycotoxins associated with Fusarium, and he has developed a detailed hypothesis connecting fungal metabolism, intestinal processes, volatile organic compounds (VOCs), and the reactions experienced by people around him. This aligns with several other stories linked to mycotoxins, although those patients did not test specifically for fungi in their systems.

His interpretation is still a hypothesis. Nevertheless, Fusarium is another candidate that deserves to be investigated. 

Fungi and yeasts are still relatively understudied compared with bacteria, particularly when it comes to the human microbiome and gastrointestinal ecosystem.

At the same time, laboratory technology continues to evolve. Testing methods are becoming more sophisticated, and laboratories are expanding the range of microorganisms and metabolites they can detect.

That matters because what we are able to find depends, to some extent, on what we know how to look for.

The Finnish patient's testing was performed by Great Plains Laboratory, the same laboratory used by several other people in the PATM/MEBO community—along with Metametrix, Genova Diagnostics, Viome, and Biohm. We have not yet found one microorganism that is consistently present across all of these cases.

Interestingly, however, there are already some preliminary overlaps.

For example, among the people whose histories and laboratory results we have examined, Citrobacter freundii and E. coli have appeared in more than one case. These findings are far too limited to establish causation - both organisms can be found in the human gastrointestinal tract of individuals not reporting MEBO/PATM issues - but repeated observations are worth documenting and investigating.

Our microbiome study provides another piece of the puzzle. Using 16S rRNA sequencing, we found several microorganisms that appeared in common among participants. Some of these may represent opportunistic organisms or secondary changes resulting from another underlying disturbance, meaning that we may have been observing consequences rather than the original cause. I will be sharing more data from this study separately, but one important finding was the remarkably high heterogeneity among participants. Even with approximately 100 participants, the sample was not large enough to overcome that heterogeneity and identify a single consistent microbial signature.

This is another reason why I am increasingly hesitant to look for one universal culprit. The microorganisms we detect may sometimes be part of the downstream effects of whatever initially disrupted the individual's gastrointestinal ecosystem.

And Fusarium gives us yet another direction to explore.

 

PATM appears not to be a single disease with a single pathogen, but rather an umbrella for several conditions, just as similar symptoms in other medical conditions can arise from very different underlying problems.

One person might have a disorder affecting bile flow. Another might have bacterial dysbiosis. Another might have fungal involvement. Another might have a different gastrointestinal, metabolic, or systemic problem that we have not yet identified.

The common denominator may therefore not be the original cause, but rather what happens downstream.

Different disturbances could potentially alter the intestinal environment, microbiome, metabolism, or the volatile compounds released by the body. If those downstream changes are capable of producing similar external effects, they could potentially lead to what patients experience as PATM or MEBO.

Patient histories are not clinical trials, and an association between two findings does not establish causation. We also have to be careful with laboratory tests: detecting an organism, metabolite, or mycotoxin does not automatically tell us where it came from or whether it is responsible for someone's symptoms.

Nevertheless, patterns are worth recording.

If the same organism appears repeatedly in unrelated patients, that deserves investigation. If several people improve after treatment of a particular gastrointestinal disorder, that deserves investigation. If a fungal organism repeatedly appears in patients with similar symptoms, that deserves investigation too.

And if entirely different medical conditions appear to precede the same phenomenon, that may be an important clue in itself.

For now, our list remains a list.

But we might eventually map it to the different pathways that can lead to the PATM/MEBO phenomenon and to what those pathways have in common.

 

REFERENCES

Gabashvili IS  Cutaneous Bacteria in the Gut Microbiome as Biomarkers of Systemic Malodor and People Are Allergic to Me (PATM) Conditions: Insights From a Virtually Conducted Clinical Trial JMIR Dermatol 2020;3(1):e10508
URL: https://derma.jmir.org/2020/1/e10508
DOI: 10.2196/10508

MEBO and PATM--associated multispecies microbiomes mostly from stool, but also skin, oral, nasal, and genital sites   https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=1413303

Ledoux, M.-P., Dicop, E., Sabou, M., Letscher-Bru, V., Castelain, V., Danion, F., & Herbrecht, R. (2024). Fusarium, Scedosporium and Other Rare Mold Invasive Infections: Over Twenty-Five-Year Experience of a European Tertiary-Care Center. Journal of Fungi, 10(4), 289. https://doi.org/10.3390/jof10040289 

 

Thursday, August 6, 2026

Can Gallbladder Problems Cause Body Odor?

People living with persistent body odor or unexplained bad breath often search for answers beyond the skin and mouth. One organ that occasionally comes up in these discussions is the gallbladder. While gallbladder disease is not considered a common cause of chronic body odor, disorders affecting bile production and bile flow can contribute to digestive disturbances, changes in the gut microbiome, and, in some cases, unpleasant odors. As a matter of fact, one of such cases was described in medical literature in 1904. 

Understanding the connection begins with understanding what the gallbladder does.

The Gallbladder's Role

The gallbladder is a small organ located beneath the liver. It stores and concentrates bile, a digestive fluid produced by the liver that helps break down dietary fats and assists in the absorption of fat-soluble vitamins (A, D, E, and K). When you eat a meal containing fat, the gallbladder contracts and releases bile into the small intestine.

When this process is disrupted, digestion may suffer. Poor fat digestion can lead to gastrointestinal symptoms, changes in the intestinal microbiome, and altered metabolism—all of which may influence the production of odor-causing compounds.

Gallstones (Cholelithiasis)

Cholelithiasis refers to the formation of gallstones inside the gallbladder. Gallstones are usually composed of cholesterol, bilirubin pigments, or a mixture of both. They develop when bile contains too much cholesterol or bilirubin, too few bile salts, or when the gallbladder does not empty efficiently.

Many people with gallstones have no symptoms. Others experience:

  • Pain in the upper right abdomen, especially after fatty meals

  • Nausea and vomiting

  • Fever (if infection develops)

  • Jaundice

  • Bloating or indigestion

Some patients report unpleasant breath or body odor during symptomatic episodes. Although this is not a classic medical sign of gallstones, digestive stagnation, bacterial overgrowth, and impaired bile flow may increase the production of sulfur-containing compounds that smell like rotten eggs.

Stones in the Common Bile Duct (Choledocholithiasis)

Sometimes gallstones leave the gallbladder and become lodged in the common bile duct, blocking the flow of bile from the liver into the intestine.

Symptoms often include:

  • Severe abdominal pain

  • Nausea and vomiting

  • Fever

  • Jaundice

  • Dark urine and pale stools

This condition requires prompt medical evaluation because obstruction can damage the liver and pancreas or lead to infection.

Cholangitis

Cholangitis is an infection and inflammation of the bile ducts, usually caused by obstruction from a gallstone, although tumors or strictures can also be responsible.

Typical symptoms include:

  • Fever and chills

  • Right upper abdominal pain

  • Jaundice

Because bile is no longer flowing normally, digestion becomes impaired, and bacterial metabolism may change dramatically. Cholangitis is a medical emergency requiring immediate treatment with antibiotics and often procedures to relieve the obstruction.

Cholecystitis

Cholecystitis is inflammation of the gallbladder, most commonly caused by a gallstone blocking the cystic duct. Trapped bile causes irritation, swelling, and sometimes infection.

Symptoms include:

  • Persistent pain in the upper right abdomen

  • Fever

  • Nausea and vomiting

  • Tenderness over the gallbladder

Some people also report digestive symptoms such as constipation, bloating, bad taste in the mouth, bad breath, or increased body odor. Pale, greasy, or foul-smelling stools may occur when bile is not reaching the intestine normally.

Why Might Gallbladder Disease Affect Odor?

Several mechanisms have been proposed:

Changes in the gut microbiome. Reduced bile flow alters the intestinal environment. Bile normally helps regulate bacterial populations, so impaired bile secretion may allow certain bacteria to flourish. Even in the 1904 article about Cholelithiasis and Cholecystitis, a microbe Eberth's bacillus, was mentioned. It is the historical name for Salmonella typhi, the rod-shaped bacterium that causes typhoid fever. (that causes body odor to resemble freshly baked brown bread or warm, musty baked bread). But, of course, in most odor cases the responsible microbes are much more benign. 

Small intestinal bacterial overgrowth (SIBO). Poor bile flow can contribute to bacterial overgrowth in susceptible individuals. Some bacteria produce volatile sulfur compounds and other odor-causing metabolites.

Fat malabsorption. Inadequate bile impairs fat digestion, leading to fermentation of undigested nutrients and changes in stool odor.

Volatile metabolites. Researchers are increasingly studying volatile organic compounds (VOCs) produced by human metabolism and gut microbes. Alterations in bile acid metabolism may change the profile of VOCs released through breath, skin, urine, and stool, although much remains to be learned.

Does Gallbladder Removal Eliminate Body Odor?

Not necessarily.

Many people undergo cholecystectomy (gallbladder removal) and recover without digestive problems. Others continue to experience gastrointestinal symptoms because the underlying issue was not the gallbladder itself but rather changes in bile acid metabolism, the gut microbiome, liver function, or intestinal motility.

If body odor began before surgery and persists afterward, it may be worthwhile to investigate other contributing factors such as:

  • Small intestinal bacterial overgrowth (SIBO)

  • Bile acid malabsorption

  • Gut dysbiosis

  • Liver disease

  • Metabolic disorders

  • Trimethylaminuria or other rare metabolic conditions

When to Seek Medical Care

Seek prompt medical attention if gallbladder symptoms are accompanied by:

  • Fever or chills

  • Jaundice

  • Severe abdominal pain lasting several hours

  • Persistent vomiting

  • Confusion or low blood pressure

These symptoms may indicate an obstructed bile duct or cholangitis, both of which require urgent treatment.

The Bottom Line

Gallbladder disease is not a common cause of chronic body odor, but it can contribute indirectly through impaired bile flow, altered digestion, and changes in the gut microbiome. For some individuals, treating gallbladder disease improves digestive symptoms and associated odors. For others, persistent odor signals that additional metabolic or gastrointestinal factors remain to be investigated.

As research into metabolomics, the microbiome, bile acids, and volatile organic compounds continues to advance, we are gaining a better understanding of the complex relationship between digestion and body odor. Rather than viewing odor as an isolated symptom, it may be more helpful to consider it as one clue within a larger network of metabolic and gastrointestinal health.

 

 

REFERENCES

Chen Y, Weng Z, Liu Q, Shao W, Guo W, Chen C, Jiao L, Wang Q, Lu Q, Sun H, Gu A. FMO3 and its metabolite TMAO contribute to the formation of gallstones. Biochimica et biophysica acta (BBA)-Molecular basis of disease. 2019 Oct 1;1865(10):2576-85.

Sagar NM, Cree IA, Covington JA, Arasaradnam RP. The interplay of the gut microbiome, bile acids, and volatile organic compounds. Gastroenterology research and practice. 2015;2015(1):398585.

McDonald CM, Reid EK, Pohl JF, Yuzyuk TK, Padula LM, Vavrina K, Altman K. Cystic fibrosis and fat malabsorption: Pathophysiology of the cystic fibrosis gastrointestinal tract and the impact of highly effective CFTR modulator therapy. Nutrition in Clinical Practice. 2024 Apr;39:S57-77.

Stockton CG. Diagnosis of Cholelithiasis and Cholecystitis, with Remarks on Medical Treatment. Buffalo Medical Journal. 1904 Apr;43(9):573.

Stavropoulos G, van Munster K, Ferrandino G, Sauca M, Ponsioen C, van Schooten FJ, Smolinska A. Liver impairment—the potential application of volatile organic compounds in hepatology. Metabolites. 2021 Sep 11;11(9):618. 

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